PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010347
Common NameLOC102586959
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 154aa    MW: 17368.3 Da    PI: 7.0734
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010347genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.53e-09133153222
                           --SS-EEEEEEE--TT-SS-E CS
                  WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                           dDgy+WrKYGqK++  +++pr
  PGSC0003DMP400010347 133 DDGYSWRKYGQKDILRAKYPR 153
                           8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-8125153IPR003657WRKY domain
SuperFamilySSF1182907.59E-7131153IPR003657WRKY domain
PfamPF031062.1E-6133153IPR003657WRKY domain
PROSITE profilePS508119.488133153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDCASNWEYK TLINELTQGI EHTKQLREHF HSTASTFENQ ELLLQKILSS YEQSLLILNW  60
GGSTVQSPPA LPPSTGAIES SVSIDGSPKS DDKKRSFQDH HELINISKKR KSQPTWTEQV  120
KVSAESGFEG PTDDGYSWRK YGQKDILRAK YPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192110KKRSFQDHHELINISKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010347
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-160HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352253.11e-109PREDICTED: probable WRKY transcription factor 53
TrEMBLM1A5571e-109M1A557_SOLTU; Uncharacterized protein
TrEMBLM1A5581e-107M1A558_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000149491e-108(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.17e-32WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]