PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010383
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 301aa    MW: 34275.3 Da    PI: 9.398
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010383genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.59.8e-3249154199
                           EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           f+kv tpsdv+k++rlv+pk++ae++     +++ +++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++
  PGSC0003DMP400010383  49 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsSSNDKGGLLLNFEDSNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQR 137
                           89****************************955666889*************************************************7 PP

                           -.SS.SEE..EEEEE-S CS
                    B3  85 d.gr.sefelvvkvfrk 99 
                             g+ s+ +l++ ++r+
  PGSC0003DMP400010383 138 GaGElSKHRLFIDWRRR 154
                           76999999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-4140159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-3146155IPR015300DNA-binding pseudobarrel domain
CDDcd100176.26E-2547137No hitNo description
SMARTSM010192.8E-2149155IPR003340B3 DNA binding domain
PROSITE profilePS5086314.29749155IPR003340B3 DNA binding domain
PfamPF023622.1E-2949154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNLFNSTIRE EASASSYHNQ QHKRPSSSTE LMLMDSSTSD AMIEREHMFD KVVTPSDVGK  60
LNRLVIPKQH AEKYFPLDSS SNDKGGLLLN FEDSNGKPWR FRYSYWNSSQ SYVMTKGWSR  120
FVKEKKLDAG DIVSFQRGAG ELSKHRLFID WRRRPHENIN NQFMIPHQFS DGRIFPLQSY  180
PTTFSRNLLV EGGSNYYNPS HSYYMYGIGN SSTSPYYSFN NNTSVAVNAS PFDNNLMKST  240
APQGYTSVVE PRVVFNSVPV VQGKVTAKRF RLFGVNMDYP MPSEESSEKG KSSMSFDLDI  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-64421551114B3 domain-containing transcription factor NGA1
5os9_B3e-64421551114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010383
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352299.20.0PREDICTED: B3 domain-containing transcription factor NGA3-like
SwissprotQ6EU309e-69Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLM1A5930.0M1A593_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000150100.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-70B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]