PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400010405

Common Name

LOC102596781

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 960aa MW: 106101 Da PI: 5.1875

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400010405	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.9	1.7e-27	554	605	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l+++Fs+++k+AA+++gvc+T+LKriCRqyGI RWP+Rki+++ PGSC0003DMP400010405 554 AEKHVSLSVLQQHFSGSLKNAAQSIGVCPTTLKRICRQYGITRWPSRKISKV 605 5899*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.495	537	625	IPR003035	RWP-RK domain
Pfam	PF02042	5.2E-24	558	605	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.14E-19	851	944	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.7E-22	856	938	No hit	No description
PROSITE profile	PS51745	19.189	859	941	IPR000270	PB1 domain
SMART	SM00666	4.1E-19	859	941	IPR000270	PB1 domain
Pfam	PF00564	1.1E-14	860	940	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MENGIGFWAS PRCSYIDDNV MEIMNLDTYS GIEQIFASYP TFSPINPMSI DYAPFEEQNT 60 ETFPCEGENL MFQQNDDQFC FVDSSEEADL VDEMGKNSSK QNYVTDLVEK CVIPKSPCQS 120 LAERMLKALE LFKKSSGEGI LAQVWVPMKS GDQYILSTYE QPFLLDQVLT GYREVSRKFT 180 FDLEMKPGSC PGLPGRVFTS RIPEWTSNVM YYKEAEYLRV QYAVDHEVRG SIALPILEDD 240 GHDTLCCAVL ELVTVKEKPN FDLETSHVCQ ALQAVNLRST TPPQFSSQSL SKNQRAALAE 300 VKDVLRAVCH AHRLPLALTW IPRSCRGGGG EIRAHARESI TSLDEKSVLC VENTACYVSD 360 KEMQGFLHAC MGHDLEEGQG IVGKSLQSNH PFFYPDVKEY HINEYPLVHH ARKFGLNAAV 420 AIRLRSVLTG DDDYVLEFFL PVDMEGSTEQ QLLLNNLSRT MQRICRSLRT LSDAELVGEG 480 GEKCGLQSES VLNLPPIDLS RKSSGQSLLD STLDLSKAPI DVCDPERAGI EANISHKQTP 540 SVSRKRTEKK RSAAEKHVSL SVLQQHFSGS LKNAAQSIGV CPTTLKRICR QYGITRWPSR 600 KISKVNRSLV KIRTVLQSVQ GIEGGLKFDT VTGGLVAATS ILQDFDSQKR TLFPCKDVSI 660 ESSEFLFQDA VSALQTSCVD NHDSLVKMEE DLNVDGNQLP ESSHFSPSSF RVGDKPNSSL 720 SGVCHGSKLA ALDRRSSLPA NPDTVPCTSS VNVSLDSFHT KGGWRSCGLN TSNLKLDNSG 780 CHFISRCPDS MANTDDIEKK MKGSIEMDGD DGVMEHNKVS SSGVTDSSNT SRSTMNGSSS 840 SSRSSGERKH TTVEDGGSQI TVKASYMEDK IRFKFEPSAG CFQLYEEVAK RFKLQIGTFH 900 LHYLDDEEEW VMLVNDADLN ECLEILDILG TRNVKFLVQD VSCTVGSSGS SNCFLTNGS*

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MENGIGFWAS PRCSYIDDNV MEIMNLDTYS GIEQIFASYP TFSPINPMSI DYAPFEEQNT  60
ETFPCEGENL MFQQNDDQFC FVDSSEEADL VDEMGKNSSK QNYVTDLVEK CVIPKSPCQS  120
LAERMLKALE LFKKSSGEGI LAQVWVPMKS GDQYILSTYE QPFLLDQVLT GYREVSRKFT  180
FDLEMKPGSC PGLPGRVFTS RIPEWTSNVM YYKEAEYLRV QYAVDHEVRG SIALPILEDD  240
GHDTLCCAVL ELVTVKEKPN FDLETSHVCQ ALQAVNLRST TPPQFSSQSL SKNQRAALAE  300
VKDVLRAVCH AHRLPLALTW IPRSCRGGGG EIRAHARESI TSLDEKSVLC VENTACYVSD  360
KEMQGFLHAC MGHDLEEGQG IVGKSLQSNH PFFYPDVKEY HINEYPLVHH ARKFGLNAAV  420
AIRLRSVLTG DDDYVLEFFL PVDMEGSTEQ QLLLNNLSRT MQRICRSLRT LSDAELVGEG  480
GEKCGLQSES VLNLPPIDLS RKSSGQSLLD STLDLSKAPI DVCDPERAGI EANISHKQTP  540
SVSRKRTEKK RSAAEKHVSL SVLQQHFSGS LKNAAQSIGV CPTTLKRICR QYGITRWPSR  600
KISKVNRSLV KIRTVLQSVQ GIEGGLKFDT VTGGLVAATS ILQDFDSQKR TLFPCKDVSI  660
ESSEFLFQDA VSALQTSCVD NHDSLVKMEE DLNVDGNQLP ESSHFSPSSF RVGDKPNSSL  720
SGVCHGSKLA ALDRRSSLPA NPDTVPCTSS VNVSLDSFHT KGGWRSCGLN TSNLKLDNSG  780
CHFISRCPDS MANTDDIEKK MKGSIEMDGD DGVMEHNKVS SSGVTDSSNT SRSTMNGSSS  840
SSRSSGERKH TTVEDGGSQI TVKASYMEDK IRFKFEPSAG CFQLYEEVAK RFKLQIGTFH  900
LHYLDDEEEW VMLVNDADLN ECLEILDILG TRNVKFLVQD VSCTVGSSGS SNCFLTNGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400010405

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352200.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	M1A5B3	0.0	M1A5B3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400015041	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400010405
Entrez Gene	102596781

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]