PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010438
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 230aa    MW: 26687.4 Da    PI: 6.157
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010438genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.3e-152791899
                          --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          +p +f+e+++g+ +    l +e +  rsW+v +  ++  + +++++GW +Fv++n+L+  Df+ F + g+s+f  +vkv+ k
  PGSC0003DMP400010438  2 IPSRFLENFNGDIPVIYLLEVEGSARRSWRVVI--ERIEEDFYFKGGWPKFVQDNNLDNEDFLNFFYAGNSTF--FVKVYGK 79
                          999***88855544445788888888*******..**********************************9999..9999876 PP
2B360.13.9e-19131224399
                           EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            + ++++++++ +l lp +f +++   g+    + ++   +++g+sW v     ++s+r  ++kGW++F ++n+L +gD++ Fkl++++
  PGSC0003DMP400010438 131 EIVMKKSNFSKMLLNLPSTFGKKYmkrGQ--VFE-KMATLQTDGKSWPVVA---RSSDRLKFRKGWRQFLQDNDLHVGDVLRFKLIDEE 213
                           566799999999************76333..344.5666677********9...8999*****************************9* PP

                           EE..EEEEE-S CS
                    B3  89 efelvvkvfrk 99 
                           +f l+v ++r+
  PGSC0003DMP400010438 214 NFILKVLIRRN 224
                           ********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.999180IPR003340B3 DNA binding domain
SuperFamilySSF1019361.88E-15281IPR015300DNA-binding pseudobarrel domain
CDDcd100177.15E-8277No hitNo description
SMARTSM010190.0014280IPR003340B3 DNA binding domain
PfamPF023629.0E-13278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-14281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-18128223IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.211129225IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-18129223IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-15129223No hitNo description
SMARTSM010193.1E-14130225IPR003340B3 DNA binding domain
PfamPF023628.6E-17131224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
KIPSRFLENF NGDIPVIYLL EVEGSARRSW RVVIERIEED FYFKGGWPKF VQDNNLDNED  60
FLNFFYAGNS TFFVKVYGKN GYLKQELNAI EELELHPLDE VNPHEIQVAS PLADEELDGS  120
ENSLVSVTLF EIVMKKSNFS KMLLNLPSTF GKKYMKRGQV FEKMATLQTD GKSWPVVARS  180
SDRLKFRKGW RQFLQDNDLH VGDVLRFKLI DEENFILKVL IRRNPSHVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010438
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-129HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361149.11e-167PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLM1A5E61e-166M1A5E6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000150791e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-10B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]