PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010522
Common NameLOC102579492
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 254aa    MW: 29094.5 Da    PI: 7.867
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010522genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.5e-1718107299
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           fk++  +      +l++p  f++ ++g+   +   +led+  r+W+v +  ++++g +++ + W +Fv +n+L+ gDf++F+++g+s+f
  PGSC0003DMP400010522  18 FKIF--HPEICYPQLRIPPAFIKFFNGD--IPSICVLEDLAARTWKVVV--KRNDGDFFFMESWPDFVLDNNLEYGDFLTFSYTGNSKF 100
                           5555..555555689*******998766..45579**************..**********************************9999 PP

                           ..EEEEE-S CS
                    B3  91 elvvkvfrk 99 
                             +vk++ k
  PGSC0003DMP400010522 101 --YVKIYGK 107
                           ..9999876 PP
2B336.21.1e-11160251499
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           + +++++l+++rl lp +f + + + k+++   tl++ ++ sW++     ++ +r  l++G ++F ++n L+++D++ Fkl+++++  l
  PGSC0003DMP400010522 160 IVIKASHLNRARLNLPAPFGNCYLKRKQRPLRATLRT-DSGSWTIVP---QYYDRLELREGMQKFIDDNALRVNDVCRFKLIDDEKLIL 244
                           567889999***********88877777888899888.6679**999...3445677*************************9999988 PP

                           EEEEE-S CS
                    B3  93 vvkvfrk 99 
                           +v++ r+
  PGSC0003DMP400010522 245 KVRIKRQ 251
                           8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2410110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-2112110IPR015300DNA-binding pseudobarrel domain
CDDcd100173.74E-1815105No hitNo description
SMARTSM010191.3E-1517108IPR003340B3 DNA binding domain
PfamPF023623.2E-1527107IPR003340B3 DNA binding domain
PROSITE profilePS5086312.80230108IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-11156250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-10156246IPR015300DNA-binding pseudobarrel domain
CDDcd100173.54E-7157250No hitNo description
PROSITE profilePS508638.727157252IPR003340B3 DNA binding domain
SMARTSM010191.5E-7158252IPR003340B3 DNA binding domain
PfamPF023627.6E-9160251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVTPVEHVSI PHDLPEFFKI FHPEICYPQL RIPPAFIKFF NGDIPSICVL EDLAARTWKV  60
VVKRNDGDFF FMESWPDFVL DNNLEYGDFL TFSYTGNSKF YVKIYGKNGC LKQDVTALKE  120
PDLLPLVEEN ARGKSIVAEP ADQTDNGSGD MAASVTSFEI VIKASHLNRA RLNLPAPFGN  180
CYLKRKQRPL RATLRTDSGS WTIVPQYYDR LELREGMQKF IDDNALRVND VCRFKLIDDE  240
KLILKVRIKR QPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-131611010104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010522
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-139HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361103.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
RefseqXP_015170626.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLM1A5L90.0M1A5L9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000151910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.17e-21B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]