PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010597
Common NameLOC107063222
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19644.8 Da    PI: 8.0531
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010597genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.42.4e-1025601650
                          HHHHHHHHHHHHHHHHT-EEEEEE.E-TTSEEEEEE CS
                SRF-TF 16 RrngilKKAeELSvLCdaevavii.fsstgklyeys 50
                           ++ + KKA+ELS+LCd++v +i  + ++  +++++
  PGSC0003DMP400010597 25 KLESLCKKAYELSILCDVKVGIICsIPQKPDVFTWP 60
                          67899****************997244556777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.6711447IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-111485IPR002100Transcription factor, MADS-box
PfamPF003191.9E-81449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MPRKRARLTT SDLDEEKRKK MLDEKLESLC KKAYELSILC DVKVGIICSI PQKPDVFTWP  60
SLIEAQNIVN DYLGFPEHKL VTHNDYLKPI VKNREKYIRK LEEIAEEKEM KNLFNELFEG  120
KELFNVREIK GLLKLIVAKR VQLEQRKIQL NEVVANDNNV GEENVGHP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219RKRARLTTSDLDEEKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170296.11e-119PREDICTED: uncharacterized protein LOC107063222
TrEMBLM1A5T31e-118M1A5T3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000153031e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-10AGAMOUS-like 96
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]