PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010653
Common NameLOC102588413
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 204aa    MW: 22928.5 Da    PI: 10.0452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010653genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-124894455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          +h+++ErrRR ri +++  L el+P++      K + a++L +A+++I+ Lq
  PGSC0003DMP400010653 48 MHKMNERRRRYRIAKKMKVLEELIPNC-----NKSNRASVLDQAIQHIQALQ 94
                          7*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.02E-114298No hitNo description
SuperFamilySSF474599.68E-1642107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.2274493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1548105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-94894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-105099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MLKGEVYLLA RFGGCYVAEI ETNNGIGITS RRNEDGFHQY TKTSCVEMHK MNERRRRYRI  60
AKKMKVLEEL IPNCNKSNRA SVLDQAIQHI QALQHQVQVM SMDRIRASTL VAAGRNQIMQ  120
STLHFNPYVP IMPRIGAIGY FFGFGKSFTY SNMYCSNFSP MLSTGGQFPF LPLSDANNLL  180
HPVPIMEAFT RGSASVAPPE KRA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010653
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-50HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170292.11e-152PREDICTED: transcription factor PIF5-like isoform X4
TrEMBLM1A5X81e-151M1A5X8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000153771e-152(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1524888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-11phytochrome interacting factor 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]