PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011154
Common NameLOC107062522
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 198aa    MW: 21610.4 Da    PI: 7.3892
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011154genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.25.1e-241459247
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          ri+n++n qvtfskRr+g++KKA+ELS+LC+a+va++ fs+++k+y
  PGSC0003DMP400011154 14 RIQNQTNLQVTFSKRRAGLFKKASELSTLCGANVAIVAFSPSNKVY 59
                          8*******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.824565IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-32564IPR002100Transcription factor, MADS-box
CDDcd002651.55E-31673No hitNo description
SuperFamilySSF554553.4E-27678IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-20727IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241459IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-202742IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-204263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MRRPNGRKKI EIARIQNQTN LQVTFSKRRA GLFKKASELS TLCGANVAIV AFSPSNKVYA  60
CGHPSVESIV DKFVGENPPP DTDDPNPIIV AHQNANIDEI NEKLNKLERS LERERKHGQA  120
LQALRTEPSN EKLSFFDLKI LCESLEAADK KVEKLASQLM ECGIEFPYQT IGSALAPLRA  180
RESTSSDSGE GSSGSGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-18691186Myocyte-specific enhancer factor 2A
3kov_B5e-18691186Myocyte-specific enhancer factor 2A
3kov_I5e-18691186Myocyte-specific enhancer factor 2A
3kov_J5e-18691186Myocyte-specific enhancer factor 2A
3p57_A5e-18691186Myocyte-specific enhancer factor 2A
3p57_B5e-18691186Myocyte-specific enhancer factor 2A
3p57_C5e-18691186Myocyte-specific enhancer factor 2A
3p57_D5e-18691186Myocyte-specific enhancer factor 2A
3p57_I5e-18691186Myocyte-specific enhancer factor 2A
3p57_J5e-18691186Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011154
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168708.11e-143PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1A7321e-142M1A732_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000160921e-143(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-32AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]