PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011226
Common NameLOC102600080
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 218aa    MW: 22972 Da    PI: 9.1295
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011226genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-062950627
                          -SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                          C+ f     C++Gd+C+FaHg+
  PGSC0003DMP400011226 29 CSKFNTAEGCRFGDKCHFAHGE 50
                          888999999***********96 PP
2zf-CCCH30.46.8e-10185208226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           kt+ C +f++ G C +G++C+FaHg
  PGSC0003DMP400011226 185 KTKMCANFSK-GLCTFGEKCHFAHG 208
                           89********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-112252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4362351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-72353IPR000571Zinc finger, CCCH-type
SMARTSM003560.0832550IPR000571Zinc finger, CCCH-type
PfamPF146080.0132949No hitNo description
SuperFamilySSF547914.97E-1588163IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.6E-1591161IPR004088K Homology domain, type 1
SMARTSM003221.2E-1091161IPR004087K Homology domain
PROSITE profilePS5008413.60792156IPR004088K Homology domain, type 1
CDDcd001056.03E-1494156No hitNo description
PfamPF000136.9E-1194158IPR004088K Homology domain, type 1
SMARTSM003560.0018183209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197183210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8184213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-14184215IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6185208IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGSNPAPPFG RNSASFSDGP GPAVKSKFCS KFNTAEGCRF GDKCHFAHGE MEIGKQVRPA  60
YDDFQAKGPP SGFSGYLEPS QPGLAATNFG ASATTTISID ASLAGNIIGK SGVNSKHICR  120
VTGVKLFIKE HETDTNKRNV ELQGTFDQIN QASAMVRELI SNISTPTGGL KKAAPFTRDP  180
PGPLKTKMCA NFSKGLCTFG EKCHFAHGAS ELQKPLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359166.11e-159PREDICTED: zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R02e-62C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM1A7921e-158M1A792_SOLTU; Uncharacterized protein
TrEMBLM1A7931e-157M1A793_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000161951e-158(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-51C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]