PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400011252

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 393aa MW: 44153.2 Da PI: 6.5147

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400011252	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.8	3.7e-11	60	95	5	40
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k+ rr+++NReAAr+sR+RKka++++Le+ +L + PGSC0003DMP400011252 60 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQ 95 788*************************86555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.6E-5	56	116	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.691	58	100	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-7	60	90	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.44E-6	60	100	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-7	62	103	No hit	No description
PROSITE pattern	PS00036	0	63	78	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-30	147	222	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MGMWDDFNAS CPSTSATMIL EVEKCLEDQI PIMIETEDTS HGTVGTSNRY EAETSKPIEK 60 VLRRLAQNRE AARKSRLRKK AYVQQLENSK LKLIQLEQEL DRARKQGLHV GAGLDASQLS 120 YSGTASSGTA VFDTEYGQWV EEQNRQTNDL RNALHHSQIS EAELRIIVDG CLNHYFELFR 180 VKATAAKADV LYIMSGMWKT SAERFFMWIG GFRPSELLKV LTPHPELLTE QQLREVCNLR 240 QSCQQAEDAL SQGMVKLHQI LGEAVAAGRL GEGNYSLPQM GPAIEKLEAL VRFVNQVVSH 300 IGFSFLSIDV LAFKVISINF MSYAPVKDSE YTYSTLKGKM GEADHLRQET LQQMSRILNT 360 HQAAQGLLAL GEYFEQLRVL SSHWATRLHE PA*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MGMWDDFNAS CPSTSATMIL EVEKCLEDQI PIMIETEDTS HGTVGTSNRY EAETSKPIEK  60
VLRRLAQNRE AARKSRLRKK AYVQQLENSK LKLIQLEQEL DRARKQGLHV GAGLDASQLS  120
YSGTASSGTA VFDTEYGQWV EEQNRQTNDL RNALHHSQIS EAELRIIVDG CLNHYFELFR  180
VKATAAKADV LYIMSGMWKT SAERFFMWIG GFRPSELLKV LTPHPELLTE QQLREVCNLR  240
QSCQQAEDAL SQGMVKLHQI LGEAVAAGRL GEGNYSLPQM GPAIEKLEAL VRFVNQVVSH  300
IGFSFLSIDV LAFKVISINF MSYAPVKDSE YTYSTLKGKM GEADHLRQET LQQMSRILNT  360
HQAAQGLLAL GEYFEQLRVL SSHWATRLHE PA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00642	SELEX	Transfer from LOC107771743	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400011252

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	S73827	0.0	S73827.1 Solanum tuberosum mas-binding factor MBF3 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001275332.1	0.0	mas-binding factor MBF2
Swissprot	P14232	0.0	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	M1A7B6	0.0	M1A7B6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400016235	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-146	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400011252

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]