PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011271
Common NameLOC102578199
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 671aa    MW: 74797.2 Da    PI: 9.0577
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011271genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.5e-07547596147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  PGSC0003DMP400011271 547 RRPFSVAEVEALVEAVEQLGTGRWRDVKICAFeyaDHRTYVDVKDKWKTL 596
                           6789999********************999999999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.19E-7350434IPR029071Ubiquitin-related domain
PROSITE profilePS500539.243354424IPR000626Ubiquitin domain
Gene3DG3DSA:1.10.10.603.9E-9541598IPR009057Homeodomain-like
PROSITE profilePS5129415.536542601IPR017930Myb domain
SMARTSM007172.9E-7546599IPR001005SANT/Myb domain
CDDcd116602.10E-14548598No hitNo description
SuperFamilySSF466892.39E-15548629IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MSSKKRVRHG FSGYEFPVIP KAPRSVRRRH SHNNIDNDQI CAFELLAAVA GELLQESESS  60
ACSNAAVGKD ELSDCREVVK REQLKEDKAV KSECFDQGSC VESAHLPEPA VQEPNLKYSL  120
DKPYHIENNI FHTEVEGGSS NLEDVCDKRT DTGTQKQLTD DGKQTEDLTV ANSCSVKGPI  180
EKHVNNNSAI NSDSSVQLPW YRAVPRPSFG KQRNNVKLGI RDDDENSFGS YRHNTNIRAF  240
RQTSRIGYKS MRKMLTSRRW KVAPQLKAGE RSCSKYGMKS FHRNRKRVCA LERCRFEIPS  300
KRRKLCHYSS VVAYDQQANS KSISNSPEKG IKRDITGAGA SASVRNHRKK DSNVKFSIKS  360
FKVPELFIEV PENETVGSLK RTVMEAVKTI LGSGLRVGMV VQGKKVRDDN KTLQQAGISQ  420
SGNLDTLGFT LEPSSYPVSP SLHSKDLPAL SPYVADHELT RRPPSPIMEL ELPSSPSAPS  480
ETRLDEHDED YHELALSPTN PIDPPTDVAI SGSRALVVVS PLNAEAHPVV PMNPKNRCSE  540
LSQRRTRRPF SVAEVEALVE AVEQLGTGRW RDVKICAFEY ADHRTYVDVK DKWKTLVHTA  600
SIAPQQRRGE PVPQELLDRV LIAHDYWSKQ HGKHQAEPSK MTEAQMQNVG ALENNNNSVS  660
MPSKMVGSAI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-605316511121Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284303RKRVCALERCRFEIPSKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011271
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346713.10.0PREDICTED: telomere repeat-binding protein 4-like
TrEMBLM1A7D50.0M1A7D5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000162600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-95TRF-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]