PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011409
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 115aa    MW: 13335.2 Da    PI: 8.4518
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011409genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.32.3e-2553103151
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                           kpr rWt eLHe Fv+av++LGG+ +AtPk+i++lm+ +++t +h+kSHLQ
  PGSC0003DMP400011409  53 KPRFRWTVELHELFVKAVNELGGPYEATPKNIVKLMDDEDITPDHIKSHLQ 103
                           79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-1452106IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-2252103IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-2053106IPR006447Myb domain, plants
PfamPF002495.1E-757103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MGRELQCEES NPYQQGASKL RNSEKYSMPE NRKKYKGETS SEKVVSCHDL NRKPRFRWTV  60
ELHELFVKAV NELGGPYEAT PKNIVKLMDD EDITPDHIKS HLQVIYACVY KKYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1653103252Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1653103252Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-1653103151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1653103151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1653103151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1653103151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1653103252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1653103252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1653103252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1653103252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1653103252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1653103252Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011409
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754469e-32HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755199e-32HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169178.16e-52PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLM1A7P52e-80M1A7P5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000164643e-81(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120621623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.13e-18G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]