PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400012163

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YA

Protein Properties

Length: 185aa MW: 20218.4 Da PI: 9.99

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400012163	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102	5.5e-32	26	82	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e e+k +k+rkpylheSRh+hA+rR+RgsgGrF PGSC0003DMP400012163 26 EEPVYVNAKQYHGILRRRQIRAKAELERKA-IKARKPYLHESRHQHAMRRARGSGGRF 82 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.1E-36	24	85	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.291	25	85	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-27	27	82	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.3E-24	28	50	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	30	50	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.3E-24	59	82	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MLCCQVHPHL FEIHHARMPL PLDMEEEPVY VNAKQYHGIL RRRQIRAKAE LERKAIKARK 60 PYLHESRHQH AMRRARGSGG RFLNTKKGND MDCTPEETKK YGATIPTHSG NSSGSGSSDQ 120 GGKEGSTVQD MHKGHSHSFA TGNGHGSSVY FAQSTGSEQG NGHYGRGSWN LLVNQASQGA 180 ASSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-21	26	89	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400012163

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-167	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006345444.1	1e-130	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_006345445.1	1e-131	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2
Swissprot	Q945M9	1e-33	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	M1A9B4	1e-135	M1A9B4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400017698	1e-130	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	1e-34	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400012163

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]