PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012203
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26095 Da    PI: 6.8838
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012203genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-173487356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa+ k
  PGSC0003DMP400012203 34 KKRRLNLEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 87
                          4557899*********************************************99 PP
2HD-ZIP_I/II129.21.7e-4133123191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++
  PGSC0003DMP400012203  33 EKKRRLNLEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKSDNDALKTQNKNLHS 121
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 el 91 
                           e+
  PGSC0003DMP400012203 122 EI 123
                           87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-192991IPR009057Homeodomain-like
SMARTSM003896.4E-183293IPR001356Homeobox domain
PROSITE profilePS5007116.0663389IPR001356Homeobox domain
PfamPF000469.3E-153487IPR001356Homeobox domain
CDDcd000861.95E-143490No hitNo description
Gene3DG3DSA:1.10.10.609.8E-193696IPR009057Homeodomain-like
PRINTSPR000318.7E-66069IPR000047Helix-turn-helix motif
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PRINTSPR000318.7E-66985IPR000047Helix-turn-helix motif
PfamPF021832.8E-1689129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MLMRRAMSFD HQDSRVDDID MSDDDGSSQL LGEKKRRLNL EQVKALERSF EIGNKLEPER  60
KMQLARALGL KPRQIAIWFQ NRRARCKTKQ LEKDYEILKR QCDKLKSDND ALKTQNKNLH  120
SEILSLRNRE SGGGGTPILF NLNKENEGSN WNNGSGDENS TIIDVNLGRT SSTNSPHNNN  180
NHDHVFQTAN FKIEEQTHEE GFCNMFTNVE DQTNYWPLPV QQHFY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18189RRARCKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012203
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168773.11e-155PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ8LAT07e-56ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLM1A9E41e-167M1A9E4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000177511e-168(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.17e-49HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]