PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012271
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 243aa    MW: 26897 Da    PI: 9.0035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012271genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd +lv +v+q+G+g+W++ + + g++R+ k+c++rw +yl
  PGSC0003DMP400012271 14 KGPWTPEEDIILVSYVQQHGPGNWRALPTKTGLHRCSKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding51.13e-1667112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w++yl
  PGSC0003DMP400012271  67 RGNFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTYL 112
                           89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.362965IPR017930Myb domain
SuperFamilySSF466892.03E-3111108IPR009057Homeodomain-like
SMARTSM007177.5E-151363IPR001005SANT/Myb domain
PfamPF002493.1E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-251568IPR009057Homeodomain-like
CDDcd001676.26E-111661No hitNo description
SMARTSM007174.2E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129420.19866116IPR017930Myb domain
PfamPF002491.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2569117IPR009057Homeodomain-like
CDDcd001674.98E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRVPCCDKV GVKKGPWTPE EDIILVSYVQ QHGPGNWRAL PTKTGLHRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT YLKKKMKKLD  120
QLDQCHGSND LFSLENGLTH LSSSNSSTSR GQWERTLQAD INMAKKALHN ALSLENPQVS  180
STTTTTYASS TENIARLLQG WMGSSTSSTN NSESSKTSSN NIATTDSSSC DGNPNAESKG  240
EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-27141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-261411627128MYB TRANSFORMING PROTEIN
1mse_C9e-27141164105C-Myb DNA-Binding Domain
1msf_C9e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012271
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX991340.0X99134.1 L.esculentum mRNA for myb-related transcription factor, THM6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168798.11e-179PREDICTED: myb-related protein 306-like
SwissprotQ9SN783e-97MYB94_ARATH; Transcription factor MYB94
TrEMBLM1A9K51e-180M1A9K5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000178441e-178(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-85myb domain protein 94
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  5. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]