PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012377
Common NameLOC102585467
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 378aa    MW: 42305.8 Da    PI: 7.8065
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012377genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.2e-32203256255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PGSC0003DMP400012377 203 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 256
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15200256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28201256IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-23203256IPR006447Myb domain, plants
PfamPF002492.0E-7204255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MPLEGVFVQP NSSSSKQIPD LSLHISPPNN TNSSNKSSSS THNSLTELSL AHPTTNNEEN  60
RSFSRNPFLQ QSQNMNSCYM INHQPHGVSL LDPIKGIPIY HHHHQDSFSN FLEKDPKRLS  120
SFGSLYSTPY INNLDHLSFL NNSCGTNVSS SRIPIVANRF HNQHNQYYNG VGLGSPSSHH  180
ENSLMMRSRF LPKFPTKRSM RAPRMRWTTS LHARFVHAVE LLGGHERATP KSVLELMDVK  240
DLTLAHVKSH LQMYRTVKTT DKPAASSGQS DGSGEEDLLA IDRILDQRGP SDGCDEPSTT  300
LWSNSSSSRE RLSQASFNES NGLIRSSSFP SQQRFGHHIE ECEYSRAMSY VGCSLDQKNP  360
SLEFTLGRSD WVEKNHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-17204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-17204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-17204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-17204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-17204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-17204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-17204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-17204258458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012377
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754449e-84HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345506.10.0PREDICTED: transcription repressor KAN1-like isoform X1
TrEMBLM1A9V20.0M1A9V2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000179810.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24682355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.17e-56G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]