PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400012605

Common Name

LOC102605180

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 489aa MW: 54371.8 Da PI: 6.8017

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400012605	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.3	3.7e-09	184	223	4	43
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAA++sR RKka++++Le+ L++ + PGSC0003DMP400012605 184 EKTLRRLAQNREAAKKSRIRKKAYVQQLETSRIRLSQLEQ 223 5788*************************86655555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.1E-7	179	227	No hit	No description
SMART	SM00338	2.9E-5	181	258	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	4.6E-7	183	227	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.071	183	227	IPR004827	Basic-leucine zipper domain
CDD	cd14708	8.56E-21	185	237	No hit	No description
SuperFamily	SSF57959	1.41E-6	185	227	No hit	No description
PROSITE pattern	PS00036	0	188	203	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.7E-32	266	340	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MASQGIGETG LTDSGTSHHN HNMPYAVFRG LNPASTSFMY HSTPNGNQEG AGFDFGELEE 60 AFVLQGFKMS NDEAKASLYA AAATGKPAAT LEMFPSWPMR YQQTPRENSK SREESTDSGS 120 LSSRAQPHFE PESPISRKTS SDHQLQITHK SLEQQQQQLQ DMASNNNPRT GVLQTELSSK 180 SNSEKTLRRL AQNREAAKKS RIRKKAYVQQ LETSRIRLSQ LEQELQRASS QGIFLGGGTA 240 AGSNISSGAA IFDMEYSRWL DDDHRHIAEL RTALQAHLSD GDLRLIVDGY IAHYDEIFNL 300 KGVAAKSDVF HLITGMWTTP AERCFLWMGG FRPSELIKML IGQLDPLTEQ QVVGIYSLQQ 360 SSQQAEEALS QGLEQLQQSL IDTVATASLH DGMHHMALAL GKLSNLEGFV RQADNLRQQT 420 LHQLHRILTV RQAARCFLVI GEYYGRLRAL SSLWLSRPRE TLIVDDNSCQ TITGLQMVQS 480 SQNHFSNF*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MASQGIGETG LTDSGTSHHN HNMPYAVFRG LNPASTSFMY HSTPNGNQEG AGFDFGELEE  60
AFVLQGFKMS NDEAKASLYA AAATGKPAAT LEMFPSWPMR YQQTPRENSK SREESTDSGS  120
LSSRAQPHFE PESPISRKTS SDHQLQITHK SLEQQQQQLQ DMASNNNPRT GVLQTELSSK  180
SNSEKTLRRL AQNREAAKKS RIRKKAYVQQ LETSRIRLSQ LEQELQRASS QGIFLGGGTA  240
AGSNISSGAA IFDMEYSRWL DDDHRHIAEL RTALQAHLSD GDLRLIVDGY IAHYDEIFNL  300
KGVAAKSDVF HLITGMWTTP AERCFLWMGG FRPSELIKML IGQLDPLTEQ QVVGIYSLQQ  360
SSQQAEEALS QGLEQLQQSL IDTVATASLH DGMHHMALAL GKLSNLEGFV RQADNLRQQT  420
LHQLHRILTV RQAARCFLVI GEYYGRLRAL SSLWLSRPRE TLIVDDNSCQ TITGLQMVQS  480
SQNHFSNF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400012605

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT693387	0.0	KT693387.1 Capsicum annuum AILZ1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006347246.1	0.0	PREDICTED: transcription factor TGA2 isoform X3
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	M1AAE6	0.0	M1AAE6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400018306	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-167	bZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400012605
Entrez Gene	102605180

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]