PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012934
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 297aa    MW: 34771.1 Da    PI: 4.9925
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012934genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.9e-1460105148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+ T +E+ +++++ + lG++ W++I ++++ gRt++++k++w+++l
  PGSC0003DMP400012934  60 RGNITSDEEAIIIKLRATLGNR-WSLIVEHLP-GRTDNEIKNYWNSHL 105
                           7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.3683354IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-93467IPR009057Homeodomain-like
SuperFamilySSF466891.0E-1841114IPR009057Homeodomain-like
PROSITE profilePS5129422.15955109IPR017930Myb domain
SMARTSM007172.0E-1459107IPR001005SANT/Myb domain
PfamPF002492.6E-1260105IPR001005SANT/Myb domain
CDDcd001671.27E-864105No hitNo description
Gene3DG3DSA:1.10.10.605.9E-1968105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKVDNKRNIK MTKEIKKKKK KIKEEHKMTE MIKEIQQRLL RCGKSCRLRW INYLKTDLKR  60
GNITSDEEAI IIKLRATLGN RWSLIVEHLP GRTDNEIKNY WNSHLSRKVD SLRIPSDEKL  120
PQAVVELAKK GTQQHISKRG RRRKINTSVS NSTNEITVNN DIEFDRTDDK MLWDDDIMLM  180
DDKYGELDQD FITNCLWDGE GENLEIANDD NNNNNNNNEI LSEDNYGKLD CWDWEYLGEV  240
LNNEIWTNST KEAEQENNNN MSLCDINDNM QNCMNKEATP ENIDPMQSDL VTWLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-182411114110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012934
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355861.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLM1AB800.0M1AB80_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000188410.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-38myb domain protein 111
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]