PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013018
Common NameLOC102600754
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 136aa    MW: 15261.8 Da    PI: 10.7715
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013018genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.82.3e-30359158
             CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                          +ep+YVNaKQy+rIl+RRq+Rak+e ekk  +k+rkpylheSRh+hAlrR R+sgGrF
  PGSC0003DMP400013018  3 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKGRKPYLHESRHQHALRRVRASGGRF 59
                          69************************9999.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-31162IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.175262IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.1E-25459IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-23527IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-233659IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MAQEPVYVNA KQYRRILQRR QSRAKAELEK KQIKGRKPYL HESRHQHALR RVRASGGRFA  60
KKTDASKGTG SVSSSGSEPL QFNAADIQKR HENGRLAELQ QSYSNGSSYG NQSTFQESKD  120
EYQSAESREG VFSGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-18359258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141460.0BT014146.1 Lycopersicon esculentum clone 133265F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361756.14e-92PREDICTED: nuclear transcription factor Y subunit A-1
RefseqXP_006361757.14e-92PREDICTED: nuclear transcription factor Y subunit A-1
TrEMBLM1ABF29e-91M1ABF2_SOLTU; Uncharacterized protein
TrEMBLM1ABF32e-92M1ABF3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000189592e-91(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.19e-32nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]