PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013098
Common NameLOC102604067
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 325aa    MW: 35145.1 Da    PI: 6.8016
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013098genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.95.3e-3446100155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  PGSC0003DMP400013098  46 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 100
                           79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.33743103IPR017930Myb domain
SuperFamilySSF466893.94E-1845100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-3245101IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-2646101IPR006447Myb domain, plants
PfamPF002491.4E-94899IPR001005SANT/Myb domain
PfamPF143792.9E-22132178IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MYQPKGVPSS SLAHSNAAVD SQSLDCGGGS MDPTGGGNNN SSLASKQRLR WTNELHERFV  60
DAVAQLGGPD RATPKGVLRV MGVQGLTIYH VKSHLQKYRL AKYLPDSSSD GKNSDKKEPR  120
DMLSSLDGSS GVEITTALKL QMEVQKRLHE QLEVQKQLQL RIEAQGKYLK KIIEEQQRLS  180
GVLSEVPGSG VTALPTGDNG PESDNRTDPG TPAPSSESPH VDKPVKAHTS TKSLSMDESF  240
SSHHSPLSPD SDCQETSLME SPNGERSSKK QRVDNVALPH QILESSLSPP YQQPHSVFMM  300
RDQFNHTSGL SLGIEDQKVS GSNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-2446103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-2446103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-2446103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-2446103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-2446103259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349121.10.0PREDICTED: myb family transcription factor APL-like
RefseqXP_006349122.10.0PREDICTED: myb family transcription factor APL-like
RefseqXP_015164958.10.0PREDICTED: myb family transcription factor APL-like
SwissprotQ9SJW01e-115PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLM1ABL40.0M1ABL4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000190990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-100G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]