PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013100
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 89aa    MW: 9304.16 Da    PI: 6.2222
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013100genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like42.21.8e-134670125
               G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                          k+rlrWt+eLHerFv+av+qLGG++
  PGSC0003DMP400013100 46 KQRLRWTNELHERFVDAVAQLGGPD 70
                          79*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.52E-54572IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-114571IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-94671IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MYQPKGVPSS SLAHSNAAVD SQSLDCGGGS MDPTGGGNNN SSLASKQRLR WTNELHERFV  60
DAVAQLGGPD SKFQDFHFVQ PSPPAYGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-114HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349121.12e-43PREDICTED: myb family transcription factor APL-like
RefseqXP_006349122.12e-43PREDICTED: myb family transcription factor APL-like
RefseqXP_015164958.12e-43PREDICTED: myb family transcription factor APL-like
TrEMBLM1ABL61e-58M1ABL6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000190999e-43(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-15G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]