PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013576
Common NameLOC107062625
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18333 Da    PI: 8.8899
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013576genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.3e-1311491250
                          HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           + k +++i KK  ELS+LCd++++vi++ ++ ++ +++
  PGSC0003DMP400013576 11 NYKKKKETIKKKTRELSILCDIKACVILVDPNREVDTWP 49
                          689***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.026152IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-13773IPR002100Transcription factor, MADS-box
PfamPF003195.1E-10948IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEKKTKGNML NYKKKKETIK KKTRELSILC DIKACVILVD PNREVDTWPE NPTDFNPIIQ  60
SYKENLFHGK RKRIDDDGCF NKKSKKNYSL FCDDGEDQWL NDVFRGSNES LLVKLNLKLE  120
AVERRIEFLK MVNYGNGVFE GSTSSEKETM AAQLQWL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013576
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2327031e-179AC232703.2 Solanum lycopersicum chromosome 05 clone C05HBa0190L02, complete sequence.
GenBankHG9755171e-179HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168976.11e-113PREDICTED: uncharacterized protein LOC107062625
TrEMBLM1ACP91e-111M1ACP9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000198611e-112(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1595856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.17e-07AGAMOUS-like 103
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]