PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013619
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 531aa    MW: 60266.8 Da    PI: 7.9286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013619genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00057462484123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kCp C+++F++   L  H r+H
  PGSC0003DMP400013619 462 HKCPFCDRMFKSGQALGGHKRSH 484
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0776991IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7646996IPR007087Zinc finger, C2H2
PfamPF139121.4E-67093IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SuperFamilySSF576676.38E-7373397No hitNo description
PfamPF139121.8E-8375399IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058375402IPR007087Zinc finger, C2H2
SMARTSM003556375397IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280377397IPR007087Zinc finger, C2H2
SuperFamilySSF576676.38E-7457484No hitNo description
PfamPF139122.4E-8462484IPR007087Zinc finger, C2H2
SMARTSM003550.015462484IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369462484IPR007087Zinc finger, C2H2
PROSITE patternPS000280464484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MESWNFSSGK NQSSGIPSGY VLRENPKKTW RVEKDSNLYC SDSPKIMTHN PTFGESDTQL  60
NTTPLPQERV CQQCGKGFPS MKALCGHMAC HSEKDKGGLK DDDDDDDDNS WTSSDHSHSD  120
TEAGELISQS CRSKTTKRYN KIVVKSNNYN CSSSVSEIDQ VQEQEELAKC LIMLSRDSRS  180
WNGVNSLVET SDNNSAILET KPSSSDMRNN ARKNGVKRVY NQDEKLRMKK EGDRITKIDM  240
LEAETQSENS DSDYYLGENG NVESDGSVER FVGNGKGKWS TSKMSFQAWL DEHRMDEKKG  300
ISRIKQYITE SSKDLGKKFE RDGYGLASNS YICESKKRTT DRYNDLEIRN DYKKMKFGVK  360
SPEGYKNDIH KTRKYECLNC KKVFSSYQAL GGHRPCHKKV NDYSESTYET GENSLGADHN  420
DPKCTKIGKH RDVFRNKKQV VPSQNLPYEP EKKVKPKKSK GHKCPFCDRM FKSGQALGGH  480
KRSHFINGGD QENFNQQSSA VKREVADLLD LNLPAPVDEE DEEHARFMSW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013619
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365137.10.0PREDICTED: zinc finger protein 91-like
TrEMBLM1ACT40.0M1ACT4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000199370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-28C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]