PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013697
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-other
Protein Properties Length: 241aa    MW: 27585 Da    PI: 5.4409
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013697genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.93.4e-13831211856
                           HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +F+ n++p+++++ +L kkl+++++qVk+WFqNrR + k
  PGSC0003DMP400013697  83 AFKDNPHPDENAILKLGKKLSVDKNQVKFWFQNRRNQAK 121
                           7**********************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.002276127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-1182125IPR009057Homeodomain-like
CDDcd000861.83E-982121No hitNo description
SuperFamilySSF466897.7E-1083124IPR009057Homeodomain-like
PfamPF000461.1E-1083121IPR001356Homeobox domain
PROSITE profilePS5007112.06684123IPR001356Homeobox domain
PfamPF031414.5E-51106240IPR004159Putative S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032259Biological Processmethylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008168Molecular Functionmethyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MKNNNDMGDT EKSLNDVENE SKFIDDKLEG GTVGDELDLH DKLSEGKKYD RPNSNKVQEL  60
VAYVPFQSFV FFLKIVCPFG SSAFKDNPHP DENAILKLGK KLSVDKNQVK FWFQNRRNQA  120
KDRQGTVDGV TEEVFQKDSE LWKRRVSYYK SVNNQLGQPA RYRNILDMNA FLGGFAANLV  180
NDPVWVMNIV PVEAKVNTLG AIYERELIGT YQSWCEAMST YPRTYDLIHA DSVFTLYENR  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013697
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-120HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1ACZ21e-179M1ACZ2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000200831e-179(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-14HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]