PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013771
Common NameLOC102603174
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 306aa    MW: 34836.9 Da    PI: 5.439
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013771genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.4e-11179222548
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                           kr +r   NR +A+rsR RK++++ eLe+ v +L+ae + L  +
  PGSC0003DMP400013771 179 KRIKRILANRQSAQRSRVRKLQYVSELERSVSTLQAEVSVLSPR 222
                           899*********************************98877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-14175239IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622177229IPR004827Basic-leucine zipper domain
PfamPF001701.6E-9179223IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.89E-11179233No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-11179230No hitNo description
CDDcd147031.24E-21180230No hitNo description
PROSITE patternPS000360182197IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAHLPPRAPN MTQNWPDFSL HQKMENLAPS AHSLWADEFL DMSSRRGSHR RSMSDSIAFL  60
ESPMVEECRR LSSTTPGSGG TTNGHEEFER FEDEQQIMSM FNDDVHDMSC SNPSSPSDYI  120
NVNEDKKMSG PDQMMMQLKS DQNEEVESSC KTNEELAIAN QNASTNNIEY SSERVVDPKR  180
IKRILANRQS AQRSRVRKLQ YVSELERSVS TLQAEVSVLS PRVAFLDHQR LLLNVDNSAL  240
RQKIAALAQD KLFKDAHQEA LKMEIERLRQ IYYQQNMKQQ MDNNTTPLAD STNTPPEIKV  300
QLSVN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013771
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350039.10.0PREDICTED: basic leucine zipper 34-like
SwissprotQ9M2K41e-91BZP61_ARATH; Basic leucine zipper 61
TrEMBLM1AD360.0M1AD36_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000202060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17752465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.27e-80bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]