PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013831
Common NameLOC102590780
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 300aa    MW: 32855.8 Da    PI: 9.7395
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013831genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK621.1e-193886351
                RWP-RK  3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51
                          k++s++++sk F+lp+ dAA ++gvc++vLK+iC ++G+ RWP+Rk++s
  PGSC0003DMP400013831 38 KSVSFDEVSKLFNLPLSDAAESVGVCASVLKKICYENGLVRWPYRKVSS 86
                          789*******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.42620107IPR003035RWP-RK domain
PfamPF020421.8E-174086IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSSLSEPRVQ LSMSNLQGSA PSSNPNPIQN PKPITDPKSV SFDEVSKLFN LPLSDAAESV  60
GVCASVLKKI CYENGLVRWP YRKVSSGKSI EDIKKEALRE KQERSLEFPK APGEKNGSLA  120
SSAISSFSGS PLPSKTISST MEMPRAGAFS QQQGTRNFQS GSSPHFRISN LTKGTSVYDE  180
FKYGFPSDGL STATYRWWGN KSPEGNQDSK LNDDNAKNST EQAENVVEKT DCQTSVDSTG  240
TTLLTDVRKR AVKEGKETLR LGVYRGRSAK MLDSTKRKIL HQVFKSYFHV NGDMSIMES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013831
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350003.10.0PREDICTED: uncharacterized protein LOC102590780 isoform X1
TrEMBLM1AD920.0M1AD92_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000202960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107441921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.14e-10Nin-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]