PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013989
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 197aa    MW: 21508.8 Da    PI: 4.9312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013989genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.4e-16138184455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  E+rRR++iN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  PGSC0003DMP400013989 138 VHNLSEKRRRSKINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 184
                           6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.57E-18128188No hitNo description
Gene3DG3DSA:4.10.280.103.9E-19131188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-19131189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.854134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-14138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-17140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MADPYRTNPH AASSLESEDM SSFFLNFLQG TSASASATAA AGFYNRSVPV PVAESSSSLN  60
FSDPGRFYAA EFKEGVENVF ASAGLGDCDG MNSANRREFL EDDKVDNFGF SSEECDGLDM  120
PSDPTHPRSS KRSRSAEVHN LSEKRRRSKI NEKLKALQNL IPNSNKTDKA SMLDEAIEYL  180
KQLQLQVQVK LLATPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013989
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-176HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354865.11e-127PREDICTED: transcription factor SPATULA-like
TrEMBLM1ADN21e-141M1ADN2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000205341e-127(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-22bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]