PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014055
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 252aa    MW: 27845.9 Da    PI: 8.4605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014055genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86e-193580147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++eEd++l ++v+++G ++W++I++++  gR++k+c++rw + 
  PGSC0003DMP400014055 35 KGPWSAEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 80
                          79*****************************9.***********985 PP
2Myb_DNA-binding55.81e-1789131347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  PGSC0003DMP400014055  89 PFSPAEDEAILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 131
                           79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8163085IPR017930Myb domain
SuperFamilySSF466891.04E-3133128IPR009057Homeodomain-like
SMARTSM007171.1E-163483IPR001005SANT/Myb domain
PfamPF002492.4E-183580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-253688IPR009057Homeodomain-like
CDDcd001675.72E-153779No hitNo description
SMARTSM007174.1E-1686134IPR001005SANT/Myb domain
PROSITE profilePS5129421.41387136IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2389135IPR009057Homeodomain-like
CDDcd001672.29E-1289132No hitNo description
PfamPF002491.2E-1489131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDFFNRCSTS SSSSESSSSE SSLSGKNPNK SERIKGPWSA EEDKILTKLV ERYGARNWSL  60
ISKYIKGRSG KSCRLRWCNQ LSPNVEHRPF SPAEDEAILA AHAKYGNRWA TIARLLPGRT  120
DNAVKNHWNS TLKRRYQQLI QQQNQNPIVF SDVKINGSGS GSGSGFGSCM EYLNVDESPK  180
GNNNNNYAVT NNCSGEFDDP MTTLSLAPPG MGGDELPEKK TESFPEGFWD VMRGVIAREV  240
REYVASTGFP N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40321351104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1220530.0AF122053.1 Solanum tuberosum clone 14 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305491.11e-140transcription factor MYB44-like
TrEMBLM1ADU40.0M1ADU4_SOLTU; Transcription factor MYB44-2
STRINGPGSC0003DMT4000206350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-56myb domain protein 77
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]