PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014087
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 449aa    MW: 48033.9 Da    PI: 8.9625
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014087genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.12.5e-15375425555
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                           +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ ee+ ++
  PGSC0003DMP400014087 375 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENDELQKKQEEMLEM 425
                           79***************************************9887776555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.6E-15367430No hitNo description
SMARTSM003382.1E-13371432IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.45373422IPR004827Basic-leucine zipper domain
CDDcd147073.25E-30375429No hitNo description
PfamPF001706.6E-13375425IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-11375424No hitNo description
PROSITE patternPS000360378393IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGSNYHFKNF GNEPPGEGGS GGGGGGGKQL GNFGLPRQSS IYSLTFDEFL SSTGGSGKDF  60
GSMNMDELLK NIWNAEENQT IGGPGINGQE VGVPRGHLQR QGSLTLPRTL SHKTVDEVWR  120
DMSKEHGGGK DGNSVGVPPN IPQTQRQQTF GEITLEEFLV RAGVVREDAL FAAKSNNTGG  180
IFGDLSYAGN NTGLAFGYQQ ANNRNTGLMA GSIPNKNGET VIQTANLPLN VNGVRSTQQQ  240
LRPQQLQQNH QPQQQQPQQQ PIFPKQPALP YGAPMAIPNS GQLGSPGMRV GMVGIPDPAL  300
NSNFIQGTAL MGGGMNMVGL GASGVTVATA SPGVSSSDGL GKSNGDTPSV SPVPYVFNGG  360
LRGRKYSTVE KVVERRQRRM IKNRESAARS RARKQAYTME LEAEVAKLKE ENDELQKKQE  420
EMLEMQKNQV HEVLFPLIFP SCCIVLLP*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014087
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9889890.0HM988989.1 Solanum tuberosum ABRE binding factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354876.10.0PREDICTED: ABRE binding factor isoform X1
RefseqXP_015167533.10.0PREDICTED: ABRE binding factor isoform X1
SwissprotQ9M7Q41e-117AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLM1ADX30.0M1ADX3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000206700.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.11e-100abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  3. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]