PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400014111

Common Name

LOC102603195

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 240aa MW: 27157.1 Da PI: 9.928

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400014111	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58	1.7e-18	129	212	4	95
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ++ps+v+ +l lp +f++++ ++++ t+tl de+g++W + ++++ l++GWk+F +++L +gD++vF+l++ ++f PGSC0003DMP400014111 129 PMLPSHVSGGFWLGLPSNFCRKNL--PRRDDTITLIDETGEEWPTVY--LAQKCG--LSGGWKRFSVDHDLADGDTIVFHLIRPTKF-- 209 6899**************9995..346679***********..555555..9*********************997777.. PP EEE CS B3 93 vvk 95 + PGSC0003DMP400014111 210 KAY 212 444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.5E-20	119	216	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.37E-23	119	217	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.21E-25	124	215	No hit	No description
PROSITE profile	PS50863	13.14	126	217	IPR003340	B3 DNA binding domain
SMART	SM01019	4.2E-22	126	217	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.0E-16	129	213	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MVKYEDLRKQ RLEENKKRME ELNLPLLTQA LKNSTSPKTT PMKKTKPRIV GTELVAVRRS 60 PRVAKSPAPE YKEVIHYERV MIPRRLATPT KRDRLFFAYA SDEERAASIE KAEKLEASLG 120 SEYPILVRPM LPSHVSGGFW LGLPSNFCRK NLPRRDDTIT LIDETGEEWP TVYLAQKCGL 180 SGGWKRFSVD HDLADGDTIV FHLIRPTKFK AYIIRVNNAN ETASTEISTS TSTSSSEAF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400014111

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-100	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	1e-100	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006354900.1	1e-177	PREDICTED: B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	2e-67	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	M1ADZ4	1e-176	M1ADZ4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400020700	1e-177	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-62	B3 family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400014111
Entrez Gene	102603195

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]