PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014182
Common NameLOC102580336
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 454aa    MW: 50235.7 Da    PI: 8.8393
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014182genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-092562882254
                           SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           ++yp+ +++  LA+++gLt +qV++WF N R +
  PGSC0003DMP400014182 256 HPYPTDSDKHMLASQTGLTRNQVSNWFINARVR 288
                           89*****************************87 PP
2BELL104.85.9e-34107174572
                  BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                             +kkakL+ ++ee++k+Ykqy++q+q+v+ssFe+vagl +a+pY+slAlk++S+hF++L++ai++++
  PGSC0003DMP400014182 107 YLQKKAKLIFMQEEICKKYKQYHQQMQMVVSSFETVAGLSAATPYISLALKTVSQHFKSLRNAITDHL 174
                           568*************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.0E-4827172IPR006563POX domain
PfamPF075265.4E-4132171IPR006563POX domain
PROSITE profilePS5007111.904229292IPR001356Homeobox domain
CDDcd000863.90E-11232293No hitNo description
SMARTSM003892.9E-9232296IPR001356Homeobox domain
SuperFamilySSF466894.11E-17234298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-28235296IPR009057Homeodomain-like
PfamPF059203.8E-18249288IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEKRNNVIVP ENFAIAHRSA VPLGPFTGYA TILKSSKFLR PAQQLLDELC ELAAGSSNVI  60
KCSNFSKKVR DGFRVSCDGN AAAESSSGGG GGGDSSGLNE SNECPEYLQK KAKLIFMQEE  120
ICKKYKQYHQ QMQMVVSSFE TVAGLSAATP YISLALKTVS QHFKSLRNAI TDHLKNIRQA  180
LGEDLPSPAS GMSNKGDGNS SRLKFVDQTS LHKQKSGGGA GVAFLESQQH VWRPQRGLPE  240
RAVAILRAWL FDHFLHPYPT DSDKHMLASQ TGLTRNQVSN WFINARVRVW KPMVEEIHML  300
ETKGGDQTRK SDVNKLVTER TSHVSRGQHF SNVLLNMSGV VMPEKQEDCQ GLIGPSERLD  360
ESSSDHHMWR NQEKRSRIEC HNISAASSMD GSLMGFVPYQ RNALDIGGNI GAVSLTLGLR  420
QNAEAAQQQQ QLQLHEHRLR QQFGGHMIHD FVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16238295158Homeobox protein Meis1
4xrs_B1e-16238295158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014182
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3563200.0AY356320.1 Solanum tuberosum putative ribosomal protein and L382 genes, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340165.10.0PREDICTED: BEL1-like homeodomain protein 8
TrEMBLM1AE490.0M1AE49_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000208250.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-82BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]