PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014183
Common NameLOC102580336
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 693aa    MW: 76122 Da    PI: 6.843
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014183genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-094955272254
                           SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           ++yp+ +++  LA+++gLt +qV++WF N R +
  PGSC0003DMP400014183 495 HPYPTDSDKHMLASQTGLTRNQVSNWFINARVR 527
                           89*****************************87 PP
2BELL1041.1e-33346413572
                  BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                             +kkakL+ ++ee++k+Ykqy++q+q+v+ssFe+vagl +a+pY+slAlk++S+hF++L++ai++++
  PGSC0003DMP400014183 346 YLQKKAKLIFMQEEICKKYKQYHQQMQMVVSSFETVAGLSAATPYISLALKTVSQHFKSLRNAITDHL 413
                           568*************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.0E-48266411IPR006563POX domain
PfamPF075261.2E-40271410IPR006563POX domain
PROSITE profilePS5007111.904468531IPR001356Homeobox domain
CDDcd000861.79E-11471532No hitNo description
SMARTSM003892.9E-9471535IPR001356Homeobox domain
SuperFamilySSF466897.7E-17473537IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-28474535IPR009057Homeodomain-like
PfamPF059206.5E-18488527IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MSDQVSEFHV AQHSRRERLR ITNSEELEII HQPYQYGNIS YDPSVVLSSS EMINFSSTAT  60
SSTGGLQHSS CGWNNVTNFN SSGSGVIETS NNLSPMFVGV GVEGVEGGVL SASLNLNSST  120
IDVKPYFYGG YNEMQQSVSV SDAITSNAEF SSSLLYHDTL QEVVKSATVG NQDVDTRRVG  180
SWMENESGLM VSNYMDQSHH LYDKNCGLGS NFRTNVSDNS SVQGLALSLS PVPTTNTLQM  240
EKRNNVIVPE NFAIAHRSAV PLGPFTGYAT ILKSSKFLRP AQQLLDELCE LAAGSSNVIK  300
CSNFSKKVRD GFRVSCDGNA AAESSSGGGG GGDSSGLNES NECPEYLQKK AKLIFMQEEI  360
CKKYKQYHQQ MQMVVSSFET VAGLSAATPY ISLALKTVSQ HFKSLRNAIT DHLKNIRQAL  420
GEDLPSPASG MSNKGDGNSS RLKFVDQTSL HKQKSGGGAG VAFLESQQHV WRPQRGLPER  480
AVAILRAWLF DHFLHPYPTD SDKHMLASQT GLTRNQVSNW FINARVRVWK PMVEEIHMLE  540
TKGGDQTRKS DVNKLVTERT SHVSRGQHFS NVLLNMSGVV MPEKQEDCQG LIGPSERLDE  600
SSSDHHMWRN QEKRSRIECH NISAASSMDG SLMGFVPYQR NALDIGGNIG AVSLTLGLRQ  660
NAEAAQQQQQ LQLHEHRLRQ QFGGHMIHDF VD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A9e-17477534158Homeobox protein Meis1
4xrs_B9e-17477534158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014183
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3563200.0AY356320.1 Solanum tuberosum putative ribosomal protein and L382 genes, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340165.10.0PREDICTED: BEL1-like homeodomain protein 8
TrEMBLM1AE490.0M1AE49_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000208250.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87202227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-80BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]