PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014291
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 200aa    MW: 22246.6 Da    PI: 4.9194
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014291genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-071446132
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32
                          rg+W++eEd +l+d ++++G+  +W + +++ g
  PGSC0003DMP400014291 14 RGPWSPEEDAKLKDFIHKFGTAgNWIALPQKAG 46
                          89******************9899988888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-6944IPR009057Homeodomain-like
PROSITE profilePS500906.644944IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.2E-91246IPR009057Homeodomain-like
PfamPF002499.0E-61445IPR001005SANT/Myb domain
CDDcd001672.81E-41640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KFGTAGNWIA LPQKAGQEQP IIIPSAQQNI  60
MYTNNNNNLM MIANNLQNYP NFGATNYNLQ NYPNFGEVAS CSSSDGSYCS QMSFGTNKDI  120
ISIKREEIMS FGHHDGAIYE EINNQQFNFG YFGNTMQEIA TSCCTNGNSG STTHSSNNLL  180
LYNNDENCNK SNEMGMFYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014291
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340126.11e-102PREDICTED: transcription factor RAX2-like
TrEMBLM1AEE31e-146M1AEE3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000209791e-147(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-24MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]