PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014333
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 89aa    MW: 10119.7 Da    PI: 11.086
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014333genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA48.33.3e-153165136
             CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36
                          +ep+YVNaKQy++Il+RRq Rak+  ++k+  ksrk
  PGSC0003DMP400014333 31 EEPMYVNAKQYHGILRRRQLRAKAVLQQKV-VKSRK 65
                          69****************************.88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.6E-92988IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115215.6223088IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-113265IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MAPSSIVNQN MERSSAVHHN GRMILPVEVK EEPMYVNAKQ YHGILRRRQL RAKAVLQQKV  60
VKSRKFESKV MKHTDIHDPK AGSNWANS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014333
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154873e-89AC215487.4 Solanum lycopersicum cultivar Heinz 1706 chromosome 0 clone C00SLm0076E07, complete sequence.
GenBankAC2442983e-89AC244298.9 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence.
GenBankAC2445883e-89AC244588.6 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence.
GenBankHG9755223e-89HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165892.15e-34PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBLM1AEI42e-58M1AEI4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000210531e-33(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.16e-15nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]