PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014334
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 241aa    MW: 27303.4 Da    PI: 9.4918
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014334genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.62.4e-2992148158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep+YVNaKQy++Il+RRq Rak+  ++k+  ksrkpylheSRh+hA+rR+R  gGrF
  PGSC0003DMP400014334  92 EEPMYVNAKQYHGILRRRQLRAKAVLQQKV-VKSRKPYLHESRHRHAMRRARDGGGRF 148
                           69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.2E-3390151IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.79291151IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-2693148IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-2294116IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-22125148IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MFQKSDGDSK REGKHVEFMP PSMGENLRAA NQFELMAPSS IAFKSYPYSE VPQYSGGNVT  60
IACGEPMVNQ NMERSSAVHH NGRMILPVEV KEEPMYVNAK QYHGILRRRQ LRAKAVLQQK  120
VVKSRKPYLH ESRHRHAMRR ARDGGGRFLN TKKKTQSTTT TNNNTTPSSK GKSSMDSDSS  180
PNYLLNYEHE IGSSNHSNSV EGFQFQSGIH DTTENLQLGC HYQWNLNDNN HCNCMHSEHF  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-2092167277NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132141RHRHAMRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-144HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165892.10.0PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBLM1AEI50.0M1AEI5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000210530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133921516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.44e-28nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]