PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014364
Common NameLOC102594573
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 245aa    MW: 28376.1 Da    PI: 6.1537
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014364genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.2e-34241152102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k+y ++ed++++++isw+++g++f+v ++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv++++         weF+++ F+kg+
  PGSC0003DMP400014364  24 FLLKTYMLVEDPATDDVISWNSDGSAFIVRQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVTTSQ---------WEFSNDLFRKGE 103
                           9****************************************************************998.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++i+rkk 
  PGSC0003DMP400014364 104 KDLLCDIRRKKA 115
                           *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.5E-5020113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3520113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-3221113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.3E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGELEDECER NLLEYVRKAS TSPFLLKTYM LVEDPATDDV ISWNSDGSAF IVRQPAEFAR  60
DLLPTLFKHS NFSSFVRQLN TYGFRKVTTS QWEFSNDLFR KGEKDLLCDI RRKKAWTNKQ  120
QPPNKNNKKE SEDEDQKSSS STSNSSSSFE YNSLVDENKR LKMENGELSY ELSLVNKKCK  180
ELIDLVAILL KNSNEEEKKE GQKGKRPMLF GVRLEVEEEM ERKRKKVELN EIASVFLSQT  240
MQIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-21211131104Putative transcription factor
5d5x_B1e-21211131104Putative transcription factor
5d5x_E1e-21211131104Putative transcription factor
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221225RKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014364
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351255.11e-178PREDICTED: heat stress transcription factor B-3-like
SwissprotO222302e-62HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLM1AEL41e-177M1AEL4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000210891e-178(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.15e-57heat shock transcription factor B3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]