PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014380
Common NameLOC107061321
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 234aa    MW: 26628.9 Da    PI: 6.7875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014380genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.94.2e-19121343128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 
                            G+rF+Ptd++l+ +yL k v++++  + + i+  d+y + +Pw L    +++++  yfF++ +k ++  +r  r  +  g Wk + k 
  PGSC0003DMP400014380  12 LGVRFRPTDDQLI-RYLIKFVASNNYVC-NDIPFGDLYGSkKPWVLL---EGSSDTKYFFTQLKKLKSDHTRFIRtLVGGGSWKGKAKG 95 
                           69***********.9**********999.6699999997759****5...4556788******************778899******** PP

                   NAM  90 kevlskkgelvglkktLvfykgra...pkgektdWvmheyrl 128
                           k+v +   ++vg+k++  + ++++    + +  +W+m+ey+l
  PGSC0003DMP400014380  96 KPVGA---KKVGIKRSYNYEENKKdgeDEVNDVSWIMKEYSL 134
                           ***87...78*********954331114456899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-206161IPR003441NAC domain
PROSITE profilePS5100523.25110161IPR003441NAC domain
PfamPF023656.4E-1513134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSITHDSPVS ELGVRFRPTD DQLIRYLIKF VASNNYVCND IPFGDLYGSK KPWVLLEGSS  60
DTKYFFTQLK KLKSDHTRFI RTLVGGGSWK GKAKGKPVGA KKVGIKRSYN YEENKKDGED  120
EVNDVSWIMK EYSLDDKVIK LLRNRGIMKH EDVVLCYIRC KVKESGNHMP TTTANENDDD  180
TQPQGPICTG ELVNHMPTTT SRRNDDDDDI QPQGPNEYAY GDQLPQHMDY ERV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165872.11e-175PREDICTED: NAC domain-containing protein 2-like
TrEMBLM1AEN01e-174M1AEN0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000211161e-175(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1421348
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]