PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014395
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 129aa    MW: 14653 Da    PI: 4.5643
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014395genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.86.9e-11107128122
                           ---SS-EEEEEEE--TT-SS-E CS
                  WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                           ldDgy+WrKYG+K+vk+s++pr
  PGSC0003DMP400014395 107 LDDGYKWRKYGKKMVKNSPNPR 128
                           59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-1193128IPR003657WRKY domain
SuperFamilySSF1182903.27E-999128IPR003657WRKY domain
PROSITE profilePS5081113.838102128IPR003657WRKY domain
PfamPF031062.0E-6108128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MDANNSSANM FDGSYTPLLD SPDSDDFSNN LINFELSDIF EIDNWPLQQA DPTLVPHYSN  60
YAANQVVNTR SSTTYHEEPN NNVGNSSERR EVKDKVAFRT LSQIEILDDG YKWRKYGKKM  120
VKNSPNPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014395
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-104HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351605.21e-90PREDICTED: probable WRKY transcription factor 51
TrEMBLM1AEP51e-89M1AEP5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000211442e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.14e-16WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]