PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014496
Common NameLOC102605756
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 155aa    MW: 17617.3 Da    PI: 10.0356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014496genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-182978255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+ a+a+++a+ +++g
  PGSC0003DMP400014496 29 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFTTAEDVARAYDRAAIEFRG 78
                          59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.22E-322885No hitNo description
PROSITE profilePS5103224.0922986IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-212986IPR016177DNA-binding domain
SMARTSM003801.5E-342992IPR001471AP2/ERF domain
PfamPF008472.0E-122978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-302986IPR001471AP2/ERF domain
PRINTSPR003672.3E-113041IPR001471AP2/ERF domain
PRINTSPR003672.3E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MTGCNYFATS STGNNNKTLK INVAKKKKNY RGVRQRPWGK WAAEIRDPRR AARVWLGTFT  60
TAEDVARAYD RAAIEFRGPR AKLNFSFADY TSIQQHNNNN NNNTSSSPLQ VQQQQGTNTE  120
EQFWDQLMIS NNEIQDFLNT MSFNGESSDF ANSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-242687264ATERF1
3gcc_A2e-242687264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014496
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-111HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165133.11e-111PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotP930072e-29EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLM1AEW81e-110M1AEW8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000213121e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.29e-32ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]