PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014551
Common NameLOC102592780
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 245aa    MW: 27458.6 Da    PI: 5.4505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014551genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.2e-06184228454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           + n  Er+RR ++++    L+ ++P a     ++++ +++L +Av+Y+ksL
  PGSC0003DMP400014551 184 TSNCSERKRR-KLKKMVKALKGIVPGA-----RRMNTVTVLDEAVRYLKSL 228
                           679999*998.7**************9.....89***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.033179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-9182237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-9183238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4184228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-7186234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.80E-8189233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MPNNYQFSPQ KPFVSLEDNA AGGNIFDIPA PSVFGTMALP TGFKSSVPFH GFEIQSSEAC  60
PKNFIIFDQT DYRSQIMYHP AMASKFPYPD LNYNSTCFQD GMERKIANNE NTEVSSYLKE  120
DSDDINALLS LEEEEHEEYD EEEVSTARTD ANYGCSSPES YSNYDCQSKK SRTSSFRKSS  180
GSSTSNCSER KRRKLKKMVK ALKGIVPGAR RMNTVTVLDE AVRYLKSLKV EVQKLGVDNL  240
KTYA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014551
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365569.10.0PREDICTED: transcription factor bHLH144-like
TrEMBLM1AF130.0M1AF13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000213830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81241924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.26e-32bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]