PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014596
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 193aa    MW: 21847 Da    PI: 8.8271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014596genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000384668123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          +kC++C+k+F +   L  H+ +H
  PGSC0003DMP400014596 46 FKCKKCKKRFESFQALGGHMTSH 68
                          89******************998 PP
2zf-C2H212.30.000592114123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cgk F     L  H+r+H
  PGSC0003DMP400014596  92 HECSICGKDFAIGQALGGHMRKH 114
                           78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.71E-1044114No hitNo description
SMARTSM003550.0174668IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-104669IPR007087Zinc finger, C2H2
PROSITE profilePS501579.664673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-590117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.74192119IPR007087Zinc finger, C2H2
SMARTSM003550.1992114IPR015880Zinc finger, C2H2-like
PfamPF139125.0E-1092117IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MCTPSTTMDM KLKKSKEDEE SVEKFAMANC VDIMRRNESL GRPKLFKCKK CKKRFESFQA  60
LGGHMTSHKN RLNKLTTMST NGELLPVNLK KHECSICGKD FAIGQALGGH MRKHRDELNQ  120
LEHKKKQKLD ENLIKSTGEL SEALYDKTKL DETSQTDELV KALHEKTSLD STRRTLTLDL  180
NLTTDENELS TG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-151HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169285.11e-132PREDICTED: zinc finger protein ZAT8-like
TrEMBLM1AF561e-136M1AF56_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000214561e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-17C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]