PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014628
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 177aa    MW: 19771.2 Da    PI: 5.6027
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014628genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-10240747
                          HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          eE e+ ++  ++lG+  W++Ia++++ gRt++++k++++ +
  PGSC0003DMP400014628  2 EEVEIVIKTYQELGNS-WSAIAAKLP-GRTDNEVKNFFHAH 40
                          8999**********99.*********.**********9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.62145IPR017930Myb domain
SMARTSM007171.7E-4243IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-9247IPR009057Homeodomain-like
PfamPF002495.8E-9240IPR001005SANT/Myb domain
CDDcd001673.38E-8241No hitNo description
Gene3DG3DSA:1.10.10.601.3E-15242IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEEVEIVIKT YQELGNSWSA IAAKLPGRTD NEVKNFFHAH LKKHLGLKNH DALLKTRKSR  60
KQTKEDEKKN STRGRLVLET SNNSSSLTTG VCSPCSSIIT CEENQMMDPF VNFSQTFEDC  120
YNNVTSLVVD QQVSDMENTC TNIGVAQPYS IPHGSAVNSF DQFDMNSFWI DVLGNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014628
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358196.11e-129PREDICTED: myb-related protein 308-like
TrEMBLM1AF721e-130M1AF72_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000214981e-129(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.23e-16myb domain protein 15
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]