PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014629
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 198aa    MW: 22608.5 Da    PI: 9.8468
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014629genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151055148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg++T eE e  ++  +qlG++ W+tIa +++ gRt++++k++++++l
  PGSC0003DMP400014629 10 RGPFTMEERETVIKMYQQLGNR-WATIAGKLP-GRTDNEVKNFFHTHL 55
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.96E-16161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-23159IPR009057Homeodomain-like
PROSITE profilePS5129420.957559IPR017930Myb domain
SMARTSM007176.9E-13957IPR001005SANT/Myb domain
PfamPF002491.5E-121055IPR001005SANT/Myb domain
CDDcd001673.16E-91255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MNYLRPDVKR GPFTMEERET VIKMYQQLGN RWATIAGKLP GRTDNEVKNF FHTHLKKHLG  60
QIKNNNNNNI DAPVKSRRAR KPKKKSSKAQ EKPQLFVDIS ETWSNMNTTN LMISPMGGSS  120
SLSSSSIITF DQNEKIDEPN PMIDMEKTVL ILESNPAATT THHHQSSSHS NIDYFDQFVD  180
NTSFWLYLLN DANRIIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014629
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-35HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755151e-35HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358201.11e-145PREDICTED: transcription factor MYB82-like
TrEMBLM1AF731e-145M1AF73_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000215011e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.28e-26myb domain protein 15
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]