PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014630
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 193aa    MW: 21982.8 Da    PI: 9.5826
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014630genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161156148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg++T eE e  ++ ++q+G++ W+tIa +++ gRt+++++++++++l
  PGSC0003DMP400014630 11 RGPFTMEERETVIKMHQQHGNR-WATIAGKLP-GRTDNEVRNFFHTHL 56
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.28E-16364IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-23460IPR009057Homeodomain-like
PROSITE profilePS5129422.519660IPR017930Myb domain
SMARTSM007172.1E-141058IPR001005SANT/Myb domain
PfamPF002493.8E-141156IPR001005SANT/Myb domain
CDDcd001672.19E-111356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDDYLRPDVK RGPFTMEERE TVIKMHQQHG NRWATIAGKL PGRTDNEVRN FFHTHLKKHL  60
GQINNNIDAP VKSRRARKSK KKSSKPQEKP QLFVDISKTW SNMNTTNLMI SPMGGSSSLS  120
SSSIITFDQN EKIDEPNPMI DMEKMVILES NPAASTHHHQ SSSHSNIDSF DQFVDTTSFW  180
LHLLDDANRI IL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754426e-40HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358201.11e-106PREDICTED: transcription factor MYB82-like
TrEMBLM1AF741e-140M1AF74_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000215031e-141(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-26myb domain protein 63
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]