PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014698
Common NameLOC102589175
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 357aa    MW: 38833.2 Da    PI: 7.3245
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014698genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.11.3e-27101183271
               E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  PGSC0003DMP400014698 101 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdatnsvagpdqkqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 183
                           689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094049.8E-1307356IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.0E-4596188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-35100183IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.9E-25102183IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.13E-21103184IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.22E-42189291IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-42190315No hitNo description
SMARTSM011381.3E-66190354IPR014889Transcription factor DP, C-terminal
PfamPF087812.0E-40191301IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MLNNLEDGGK NPSEVSRGAN GRGGGGTRSW GTTVSGQSVS TSSSIGSPSS RSEAAMATPA  60
SDNTFLRLNN LDIHADDAGS QGTAGNRKKK RAQRATGGDK SGRGLRQFSM KVCEKVESKG  120
RTTYNEVADE LVAEFSDATN SVAGPDQKQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ  180
WKGLPRTDAN DIEELKTERL NLRNRIEKKA AYLEELEDQY VGLQNLIKRN DQLYGSGNAP  240
SGGVALPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYILKA MNFCGRPNDS  300
AVPQNLSADG GEGPSSRMAN MFQHHIAHPS VPNSSGKLPT SPPLPGILKA RVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3994189194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014698
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6845580.0KC684558.1 Solanum lycopersicum transcription factor DP/E2 dimerization partner-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362266.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-159DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM1AFD60.0M1AFD6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000215920.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-145Transcription factor DP
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]