PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014725
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 219aa    MW: 25430.8 Da    PI: 8.8798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014725genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.62.9e-24105165259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                            Dg++WrKYGqK++ + ++pr+Y+rCt++   gC++ k+v+r +e+p ++ itY g+H+++
  PGSC0003DMP400014725 105 YDGHAWRKYGQKKILNDKYPRNYFRCTHKfdqGCQANKQVQRIQENPPLFRITYYGHHTCK 165
                           59**************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-2691165IPR003657WRKY domain
PROSITE profilePS5081119.88799162IPR003657WRKY domain
SuperFamilySSF1182902.22E-24100166IPR003657WRKY domain
SMARTSM007743.3E-35104166IPR003657WRKY domain
PfamPF031067.0E-24106165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKSSLLKNKT SDLEKIIVEL NRGREFTCRL REILKKHVDH VDDEDAYMLV GKIMSSFCAT  60
LSILSSNEDS SSSSCKISSL KDQRGRYKRR RTLETSIKET STLVYDGHAW RKYGQKKILN  120
DKYPRNYFRC THKFDQGCQA NKQVQRIQEN PPLFRITYYG HHTCKTCPKV SQMICDSPND  180
HEDSNSVLLN FNSTNNNYNN HHHFLGMMVE TVDLSFEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-231061651069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014725
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-115HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543153.11e-110PREDICTED: probable WRKY transcription factor 70
SwissprotK4BIZ92e-37WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLM1AFF61e-163M1AFF6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000216251e-163(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-30WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]