PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014738
Common NameLOC102595265
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 118aa    MW: 12353.5 Da    PI: 9.2485
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014738genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001692113323
                           ETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                           C+ C+++F +   L++H +  H
  PGSC0003DMP400014738  92 CKTCNRTFGSENALESHSKAkH 113
                           *****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.34E-580112No hitNo description
PROSITE profilePS5015710.59690117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092113IPR007087Zinc finger, C2H2
PfamPF139123.0E-692114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MGEDEEGDSD EDQSDESEEG TPKKAEPSRK RPADSAAKTP VPDKKTKFLT PQKTDGKKGA  60
VHVATPHPSK QAGKTPGNKP NQTPKSGGSL ACKTCNRTFG SENALESHSK AKHSVGK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014738
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0140291e-175BT014029.1 Lycopersicon esculentum clone 133091F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338944.14e-78PREDICTED: histone deacetylase HDT1-like
SwissprotQ6V9I68e-36HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLM1AFG92e-77M1AFG9_SOLTU; Uncharacterized protein
TrEMBLM1AFH01e-76M1AFH0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000216442e-77(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-27histone deacetylase 2C
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]