PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014921
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 109aa    MW: 12444 Da    PI: 5.2676
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014921genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26025.15e-082435899
                DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
                          +++l+ eA++r ++Pv+G+++v  kl+ ++e++ +el+l+++
  PGSC0003DMP400014921  2 VETLILEAKIRYENPVHGCIAVEEKLRLEIEETMKELDLVQK 43
                          789**********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031953.7E-6242IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MVETLILEAK IRYENPVHGC IAVEEKLRLE IEETMKELDL VQKANAYFKE LRKRSLYYKK  60
NKETSTSGTQ SFKGHKSDST LEEATSITEH HAIQDVETRI DLNDNDGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014921
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755212e-48HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366363.11e-73PREDICTED: LOB domain-containing protein 24-like
TrEMBLM1AFV95e-73M1AFV9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000219148e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]