PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400015241

Common Name

LOC102591339

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 246aa MW: 28243.1 Da PI: 6.89

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400015241	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147	9.5e-46	9	135	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPt+eel+++yLk+ ++++k++ ++i ++iy ++Pw+Lp +++ +e+ewyfF++ ++k+ + r+nr+t+sg+Wkatg+d++ PGSC0003DMP400015241 9 PGFRFHPTEEELINFYLKRIINDDKIDS-NTIGFLNIYLYDPWELPGMARIGEREWYFFVPINRKHGPKGRPNRTTRSGFWKATGSDRQ 96 9************************9.88***********8888999******************************** PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + s+ ++++glkktLvfy grapkg++tdWvm+eyrl PGSC0003DMP400015241 97 IRSSlePKKAIGLKKTLVFYGGRAPKGTRTDWVMNEYRL 135 99888889***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.131	7	152	IPR003441	NAC domain
SuperFamily	SSF101941	2.88E-53	8	152	IPR003441	NAC domain
Pfam	PF02365	3.0E-25	9	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSLTELELPG FRFHPTEEEL INFYLKRIIN DDKIDSNTIG FLNIYLYDPW ELPGMARIGE 60 REWYFFVPIN RKHGPKGRPN RTTRSGFWKA TGSDRQIRSS LEPKKAIGLK KTLVFYGGRA 120 PKGTRTDWVM NEYRLPHGHK DHDIVLCKVY RKATSFKVLE ERAMIEEDAA KPYLASAAPH 180 DESQDMLVSL ESSSKNDMYF KSCEEENHEL LGSNAFVEPP KFSIDSLSSP LWSTGQDLWT 240 LFSLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-43	3	155	12	168	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-43	3	155	12	168	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-43	3	155	12	168	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-43	3	155	12	168	NO APICAL MERISTEM PROTEIN
3swm_A	6e-43	3	155	15	171	NAC domain-containing protein 19
3swm_B	6e-43	3	155	15	171	NAC domain-containing protein 19
3swm_C	6e-43	3	155	15	171	NAC domain-containing protein 19
3swm_D	6e-43	3	155	15	171	NAC domain-containing protein 19
3swp_A	6e-43	3	155	15	171	NAC domain-containing protein 19
3swp_B	6e-43	3	155	15	171	NAC domain-containing protein 19
3swp_C	6e-43	3	155	15	171	NAC domain-containing protein 19
3swp_D	6e-43	3	155	15	171	NAC domain-containing protein 19
4dul_A	6e-43	3	155	12	168	NAC domain-containing protein 19
4dul_B	6e-43	3	155	12	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400015241

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-125	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	1e-125	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006367161.1	0.0	PREDICTED: NAC transcription factor 25-like isoform X2
Swissprot	Q10S65	8e-80	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	M1AGL4	0.0	M1AGL4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400022365	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3531	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	3e-79	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400015241
Entrez Gene	102591339

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]