PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015357
Common NameLOC102579893
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 130aa    MW: 14357.2 Da    PI: 9.3648
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015357genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-17655255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          +y+G+r++k +g+Wv+eIr+p   g +  r +lg++ ++e Aa a++ a  +l+ 
  PGSC0003DMP400015357  6 KYRGIRRRK-WGKWVSEIRVP---G-SsERLWLGTYTSPEAAAIAHDIAYYCLRP 55
                          8*****998.**********8...4.34************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-23566No hitNo description
PROSITE profilePS5103220.903666IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-24667IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16666IPR016177DNA-binding domain
SMARTSM003801.2E-23672IPR001471AP2/ERF domain
PfamPF008475.9E-9653IPR001471AP2/ERF domain
PRINTSPR003676.7E-9718IPR001471AP2/ERF domain
PRINTSPR003676.7E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MSSGAKYRGI RRRKWGKWVS EIRVPGSSER LWLGTYTSPE AAAIAHDIAY YCLRPESSSL  60
HKLNFPSMLP PNVQPGMSPT SVQKVASDAA MAIDAQFLTI PTPAQQHRQT ADNYGQNQGL  120
NISVEDYQY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015357
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-169HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006337962.12e-93PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotQ9C9I83e-41ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLM1AGV86e-92M1AGV8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000225281e-92(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-43ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]